Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_2157Tail tape meausure protein, putative. (973 aa)    
Predicted Functional Partners:
DVU_2153
Tail fiber protein, putative.
 
   0.960
DVU_1486
Tail fiber protein, truncation.
 
   0.936
DVU_2155
Hypothetical protein; Identified by Glimmer2; putative.
  
   0.909
DVU_1488
Minor tail protein, putative.
  
 
 0.904
DVU_2156
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.793
DVU_2154
Tail assembly protein, putative; Identified by match to protein family HMM PF00877.
 
 
 0.780
DVU_2169
Conserved hypothetical protein; Identified by similarity to GP:311850.
  
   0.688
DVU_2159
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.593
DVU_2151
Conserved hypothetical protein; Identified by similarity to SP:P54342.
  
    0.592
DVU_2152
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.592
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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