Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2161Hypothetical protein; Identified by Glimmer2; putative. (236 aa)    
Predicted Functional Partners:
DVU_2159
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.811
DVU_2160
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.793
DVU_2162
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.782
DVU_2158
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.756
DVU_2164
Lipoprotein, putative.
  
    0.742
DVU_2163
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.725
DVU_2165
Lysozyme, putative; Identified by match to protein family HMM PF01464.
  
    0.638
DVU_2166
Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
  
    0.475
DVU_2157
Tail tape meausure protein, putative.
  
    0.464
DVU_2156
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.441
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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