STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2165Lysozyme, putative; Identified by match to protein family HMM PF01464. (166 aa)    
Predicted Functional Partners:
DVU_2166
Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
  
    0.736
DVU_2161
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.638
DVU_2159
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.556
fliI
Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026.
  
  
 0.536
DVU_0863
Flagellar hook-associated protein 2, putative; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.535
fliE
Flagellar basal body component FliE; Identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205.
  
  
 0.528
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
  
    0.528
DVU_2164
Lipoprotein, putative.
  
    0.516
DVU_2167
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.506
DVU_2168
Major head protein; Identified by match to protein family HMM PF03864.
  
    0.500
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.