STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2166Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593. (132 aa)    
Predicted Functional Partners:
DVU_1105
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.744
DVU_2193
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.737
DVU_2165
Lysozyme, putative; Identified by match to protein family HMM PF01464.
  
    0.736
DVU_2194
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.697
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
  
    0.672
DVU_2168
Major head protein; Identified by match to protein family HMM PF03864.
  
    0.622
DVU_1120
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1417.
   
    0.596
DVU_2164
Lipoprotein, putative.
  
    0.564
DVU_2169
Conserved hypothetical protein; Identified by similarity to GP:311850.
  
    0.541
DVU_2170
Identified by match to protein family HMM PF01343.
  
    0.538
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.