Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2167Hypothetical protein; Identified by Glimmer2; putative. (69 aa)    
Predicted Functional Partners:
DVU_2168
Major head protein; Identified by match to protein family HMM PF03864.
  
    0.808
DVU_2169
Conserved hypothetical protein; Identified by similarity to GP:311850.
  
    0.790
DVU_2170
Identified by match to protein family HMM PF01343.
  
    0.789
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
  
    0.755
DVU_2172
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.752
DVU_2173
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.560
DVU_2166
Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
  
    0.541
DVU_2165
Lysozyme, putative; Identified by match to protein family HMM PF01464.
  
    0.512
DVU_2161
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.409
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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