Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_2169Conserved hypothetical protein; Identified by similarity to GP:311850. (122 aa)    
Predicted Functional Partners:
DVU_1261
Conserved domain protein; Identified by similarity to SP:P45754.
  
 
 0.897
DVU_2170
Identified by match to protein family HMM PF01343.
  
  
 0.895
DVU_1490
Tail tape measure protein, putative.
  
 
 0.858
DVU_2168
Major head protein; Identified by match to protein family HMM PF03864.
  
    0.808
DVU_2167
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.790
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
  
  
 0.783
DVU_2172
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.762
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
  
 
 0.688
DVU_1102
Baseplate assembly protein, putative.
  
 
 0.688
DVU_2157
Tail tape meausure protein, putative.
  
   0.688
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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