STRINGSTRING
DVU_2170 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2170" - Identified by match to protein family HMM PF01343 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2170Identified by match to protein family HMM PF01343 (406 aa)    
Predicted Functional Partners:
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 (517 aa)
 
     
  0.850
DVU_2168
Major head protein; Identified by match to protein family HMM PF03864 (341 aa)
              0.847
DVU_2169
Uncharacterized protein; Identified by similarity to GP-311850 (122 aa)
              0.845
DVU_2167
Uncharacterized protein; Identified by Glimmer2; putative (69 aa)
              0.842
DVU_2172
Uncharacterized protein; Identified by Glimmer2; putative (73 aa)
              0.811
DVU_2173
Uncharacterized protein; Identified by Glimmer2; putative (41 aa)
              0.605
DVU_2166
Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593 (132 aa)
              0.532
DVU_2165
Lysozyme, putative; Identified by match to protein family HMM PF01464 (166 aa)
              0.498
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (19%) [HD]