DVU_2188 protein (Desulfovibrio vulgaris Hildenborough)

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DVU_2188

Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613. (830 aa)

Predicted Functional Partners:

dnaB

0.859

DVU_2878

0.806

DVU_0192

0.803

DVU_1768

0.795

engA

0.795

polA

0.763

obg

0.757

miaA

0.721

DVU_1584

0.717

rpoD

0.717

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0192	DVU_2188	DVU_0192	DVU_2188	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	0.803
DVU_0192	DVU_2878	DVU_0192	DVU_2878	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	0.870
DVU_0192	dnaB	DVU_0192	DVU_0959	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.498
DVU_1584	DVU_2188	DVU_1584	DVU_2188	Sigma 70 family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	0.717
DVU_1584	polA	DVU_1584	DVU_0496	Sigma 70 family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.606
DVU_1584	rpoD	DVU_1584	DVU_1788	Sigma 70 family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily.	0.511
DVU_1768	DVU_2188	DVU_1768	DVU_2188	Identified by match to protein family HMM TIGR00231.	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	0.795
DVU_2188	DVU_0192	DVU_2188	DVU_0192	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	0.803
DVU_2188	DVU_1584	DVU_2188	DVU_1584	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Sigma 70 family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.717
DVU_2188	DVU_1768	DVU_2188	DVU_1768	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Identified by match to protein family HMM TIGR00231.	0.795
DVU_2188	DVU_2878	DVU_2188	DVU_2878	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	0.806
DVU_2188	dnaB	DVU_2188	DVU_0959	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.859
DVU_2188	engA	DVU_2188	DVU_3194	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.795
DVU_2188	miaA	DVU_2188	DVU_1533	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.	0.721
DVU_2188	obg	DVU_2188	DVU_0929	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	GTP-binding protein, GTP1/OBG family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	0.757
DVU_2188	polA	DVU_2188	DVU_0496	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.763
DVU_2188	rpoD	DVU_2188	DVU_1788	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily.	0.717
DVU_2878	DVU_0192	DVU_2878	DVU_0192	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	0.870
DVU_2878	DVU_2188	DVU_2878	DVU_2188	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.	0.806
DVU_2878	dnaB	DVU_2878	DVU_0959	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.498

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