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DVU_2215 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2215" - Identified by match to protein family HMM PF00076 in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2215Identified by match to protein family HMM PF00076 (89 aa)    
Predicted Functional Partners:
trx
Thioredoxin; Identified by similarity to SP-P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family (107 aa)
       
      0.762
infA-2
Translation initiation factor IF-1 2; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex (87 aa)
   
      0.655
gpmA
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (511 aa)
     
 
  0.627
DVU_3330
Uncharacterized protein; Identified by similarity to OMNI-NTL01TE1332 (91 aa)
           
  0.533
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (304 aa)
     
      0.530
DVU_1530
Identified by match to protein family HMM PF00753 (536 aa)
     
 
  0.528
rhlE
ATP-dependent RNA helicase RhlE; Identified by similarity to SP-P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 (462 aa)
   
 
  0.516
DVU_2214
Uncharacterized protein; Identified by Glimmer2; putative (57 aa)
              0.507
DVU_2103
Iron-sulfur cluster-binding/ATPase domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00991 (287 aa)
           
  0.507
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (276 aa)
     
      0.505
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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