Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DVU_2228motB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691. (244 aa)    
Predicted Functional Partners:
motA-2
Chemotaxis protein MotA; Identified by similarity to SP:P28611; match to protein family HMM PF01618.
 
 0.997
motA-1
Chemotaxis protein MotA; Identified by similarity to SP:P28611; match to protein family HMM PF01618.
 
 0.989
pomA
Chemotaxis protein PomA; Identified by similarity to SP:O06873; match to protein family HMM PF01618.
 
 0.988
motA-3
Chemotaxis protein MotA; Identified by similarity to SP:P09348.
  
 0.961
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.954
cheV-2
Chemotaxis protein CheV; Identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584.
 
  
 0.824
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
 
  
 0.819
cheV-3
Chemotaxis protein CheV; Identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584.
 
  
 0.815
cheV-1
Chemotaxis protein CheV; Identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584.
 
  
 0.814
DVU_0520
Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.
 
  
 0.798
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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