STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2247Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578. (204 aa)    
Predicted Functional Partners:
DVU_1586
Thioredoxin family protein; Identified by similarity to SP:P36893.
  
 0.984
DVU_1457
Thioredoxin reductase, putative; Identified by similarity to SP:Q05741; match to protein family HMM PF00070.
  
 
 0.890
trxB-2
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292.
  
 
 0.889
DVU_0283
AhpF family protein/thioredoxin reductase; Identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292.
  
 
 0.888
trxB-1
Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.
  
 
 0.887
DVU_2318
Rubrerythrin, putative; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.
  
  
 0.876
fur-2
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
  
  
 0.875
DVU_0024
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0251.
  
    0.864
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.787
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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