STRINGSTRING
DVU_2271 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2271" - Pyruvate formate-lyase activating enzyme, putative in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2271Pyruvate formate-lyase activating enzyme, putative; Identified by similarity to SP-Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055 (297 aa)    
Predicted Functional Partners:
DVU_2272
Formate acetyltransferase, putative; Identified by similarity to SP-P32674; match to protein family HMM PF01228; match to protein family HMM PF02901 (817 aa)
   
  0.961
DVU_2824
Formate acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901 (828 aa)
   
  0.906
DVU_2269
Uncharacterized protein; Identified by Glimmer2; putative (55 aa)
         
  0.897
DVU_2270
Uncharacterized protein; Identified by Glimmer2; putative (37 aa)
              0.806
poR
Pyruvate synthase; Identified by similarity to GP-1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 (1215 aa)
         
  0.544
DVU_2275
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 (484 aa)
         
  0.511
DVU_2823
TRAP transporter, DctMQ subunit; Identified by similarity to GP-12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786 (591 aa)
           
  0.495
DVU_2273
Uncharacterized protein; Identified by Glimmer2; putative (109 aa)
              0.414
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (13%) [HD]