Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2277Hypothetical protein; Identified by Glimmer2; putative. (203 aa)    
Predicted Functional Partners:
DVU_2276
Membrane protein, putative; Identified by match to protein family HMM PF01925.
 
    0.830
DVU_2278
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
    0.626
DVU_2280
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
 
    0.603
DVU_1382
HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family.
  
     0.486
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
  
     0.483
DVU_2611
Conserved hypothetical protein.
  
    0.445
DVU_2820
Identified by match to protein family HMM PF04909.
  
     0.432
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
  
     0.424
DVU_2272
Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901.
 
    0.417
DVU_0359
HesB-like domain.
  
     0.416
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.