Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DVU_2291Carbon monoxide-induced hydrogenase CooH, putative; Identified by similarity to SP:P31895; match to protein family HMM PF00346. (366 aa)    
Predicted Functional Partners:
DVU_2288
Hydrogenase, CooL subunit, putative; Identified by similarity to GP:1515468; match to protein family HMM PF01058.
 
 0.999
DVU_2289
Hydrogenase, CooX subunit, putative; Identified by match to protein family HMM PF00037.
 
 
 0.997
DVU_0432
Ech hydrogenase, subunit EchC, putative; Identified by similarity to GP:3005969; Belongs to the complex I 20 kDa subunit family.
 
 0.995
DVU_2290
Hydrogenase, CooU subunit, putative; Identified by similarity to GP:1515470; match to protein family HMM PF00329.
 
 
 0.994
DVU_2286
Hydrogenase, CooM subunit, putative; Identified by similarity to GP:1515466; match to protein family HMM PF00361.
 
 
 0.993
DVU_2287
Hydrogenase, CooK subunit, selenocysteine-containing, putative; Selenoprotein; identified by similarity to GP:1515467; match to protein family HMM PF00146.
 
 
 0.986
cooF
Iron-sulfur protein CooF; Identified by similarity to SP:P31894; match to protein family HMM PF00037.
  
 
 0.936
DVU_0433
Ech hydrogenase, subunit EchB, putative; Identified by similarity to GP:3005968; match to protein family HMM PF00146.
 
 
 0.935
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
 
 0.849
DVU_0429
Ech hydrogenase, subunit EchF, putative; Identified by similarity to GP:3005972; match to protein family HMM PF00037.
 
 
 
 0.811
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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