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DVU_2380 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2380" - ABC transporter, ATP-binding protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2380ABC transporter, ATP-binding protein; Identified by similarity to SP-P72335; match to protein family HMM PF00005 (301 aa)    
Predicted Functional Partners:
DVU_2382
Conserved domain protein; Identified by similarity to GP-29340940 (454 aa)
 
          0.959
DVU_2381
Uncharacterized protein; Identified by similarity to GP-29340941 (222 aa)
 
          0.957
DVU_2379
Peptidase, M16 family, putative; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family (1005 aa)
              0.848
DVU_2383
TonB dependent receptor domain protein; Identified by match to protein family HMM PF00593 (875 aa)
 
          0.739
DVU_2387
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005 (592 aa)
           
0.567
DVU_2389
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472 (137 aa)
         
  0.564
tolQ-1
TolQ protein; Identified by similarity to SP-P05828; match to protein family HMM PF01618 (317 aa)
              0.563
DVU_2390
TonB domain protein; Identified by similarity to GP-19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352 (302 aa)
              0.558
DVU_2386
ABC transporter, permease protein; Identified by match to protein family HMM PF00528 (343 aa)
              0.556
DVU_2385
ABC transporter, permease protein; Identified by match to protein family HMM PF00528 (373 aa)
              0.556
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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