Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2385ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (373 aa)    
Predicted Functional Partners:
DVU_2384
ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
  
 0.981
DVU_2386
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.981
DVU_2387
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.973
DVU_2389
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
    0.780
tolQ-1
tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618.
       0.773
DVU_2390
TonB domain protein; Identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
       0.773
DVU_2462
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
     0.756
DVU_0167
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
     0.630
DVU_2383
tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593.
       0.608
DVU_2381
Conserved hypothetical protein; Identified by similarity to GP:29340941.
       0.537
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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