Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2397Hypothetical protein; Identified by Glimmer2; putative. (247 aa)    
Predicted Functional Partners:
DVU_2026
Conserved hypothetical protein; Identified by similarity to GP:19916320.
  
 
 0.887
DVU_2022
Conserved hypothetical protein; Identified by similarity to GP:28629295.
  
  
 0.847
DVU_2019
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA2298.
  
  
 0.840
DVU_2025
Conserved hypothetical protein; Identified by similarity to GP:19882263; match to protein family HMM TIGR01612.
  
    0.831
DVU_2024
Conserved hypothetical protein; Identified by similarity to OMNI:NMB2085.
  
    0.802
DVU_2149
Conserved hypothetical protein; Identified by similarity to GP:21666416; match to protein family HMM PF05670.
  
    0.678
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
   
    0.493
DVU_2398
Conserved hypothetical protein; Identified by similarity to OMNI:TM0095.
  
    0.455
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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