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DVU_2398 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2398" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2398Uncharacterized protein; Identified by similarity to OMNI-TM0095 (163 aa)    
Predicted Functional Partners:
DVU_2399
Hydrogenase, putative; Identified by similarity to GP-21327886; match to protein family HMM PF00175; match to protein family HMM PF00970 (283 aa)
 
 
 
  0.942
DVU_2401
Hydrogenase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02662 (494 aa)
 
 
      0.925
hdrB
Heterodisulfide reductase, B subunit; Identified by similarity to GP-3378542; match to protein family HMM PF02754 (334 aa)
 
 
      0.915
DVU_2400
Hydrogenase, putative; Identified by similarity to GP-21327885 (360 aa)
 
 
      0.894
DVU_0742
Uncharacterized protein; Identified by Glimmer2; putative (278 aa)
   
          0.674
hdrC
Heterodisulfide reductase, C subunit; Identified by similarity to GP-12642421 (186 aa)
 
     
  0.606
DVU_2978
Hydrolase, haloacid dehalogenase-like family; Identified by similarity to OMNI-NTL02EC4785; match to protein family HMM PF00702 (210 aa)
 
          0.586
DVU_1431
Hpt domain protein/STAS domain protein; Identified by match to protein family HMM PF01627; match to protein family HMM PF01740 (731 aa)
   
          0.565
DVU_0919
Uncharacterized protein; Identified by Glimmer2; putative (144 aa)
   
          0.549
DVU_1006
Uncharacterized protein; Identified by Glimmer2; putative (149 aa)
   
          0.536
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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