Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2399Hydrogenase, putative; Identified by similarity to GP:21327886; match to protein family HMM PF00175; match to protein family HMM PF00970. (283 aa)    
Predicted Functional Partners:
DVU_2400
Hydrogenase, putative; Identified by similarity to GP:21327885.
   0.998
DVU_2401
Hydrogenase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02662.
 
 
 0.995
DVU_2398
Conserved hypothetical protein; Identified by similarity to OMNI:TM0095.
 
 
 0.977
hdrA
Heterodisulfide reductase, A subunit; Identified by similarity to GP:12642418; match to protein family HMM PF00037.
 
  
 0.950
hdrC
Heterodisulfide reductase, C subunit; Identified by similarity to GP:12642421.
 
  
 0.943
hdrB
Heterodisulfide reductase, B subunit; Identified by similarity to GP:3378542; match to protein family HMM PF02754.
 
  
 0.942
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.
 
 
 0.939
carB
Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369.
  
 
 0.902
pyrF
Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
  
 0.823
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
  
 0.823
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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