STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdrBHeterodisulfide reductase, B subunit; Identified by similarity to GP:3378542; match to protein family HMM PF02754. (334 aa)    
Predicted Functional Partners:
hdrA
Heterodisulfide reductase, A subunit; Identified by similarity to GP:12642418; match to protein family HMM PF00037.
 0.999
hdrC
Heterodisulfide reductase, C subunit; Identified by similarity to GP:12642421.
 
 0.999
DVU_2401
Hydrogenase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02662.
 
 
 0.993
DVU_0849
Heterodisulfide reductase, iron-sulfur-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02662.
 
 
 0.981
DVU_0848
Heterodisulfide reductase, putative; Identified by similarity to GP:1890204.
 
 0.969
DVU_2400
Hydrogenase, putative; Identified by similarity to GP:21327885.
 
    0.950
DVU_2399
Hydrogenase, putative; Identified by similarity to GP:21327886; match to protein family HMM PF00175; match to protein family HMM PF00970.
 
  
 0.935
DVU_2398
Conserved hypothetical protein; Identified by similarity to OMNI:TM0095.
 
    0.736
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
  
 0.642
DVU_3292
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070.
   
 
 0.625
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (18%) [HD]