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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2409Bacterial extracellular solute-binding proteins, family 3; Identified by match to protein family HMM PF00497. (270 aa)    
Predicted Functional Partners:
DVU_0852
Extracellular solute-binding protein, putative.
  
    0.770
DVU_1388
Conserved hypothetical protein; Identified by similarity to OMNI:SO1143.
  
     0.768
DVU_2662
Conserved hypothetical protein; Identified by similarity to SP:P54952.
  
    0.767
DVU_3266
Conserved hypothetical protein.
  
     0.746
DVU_0089
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0583.
  
     0.741
DVU_3039
Conserved hypothetical protein; Identified by similarity to GP:9949385.
  
    0.682
DVU_1562
HAMP domain protein; Identified by match to protein family HMM PF00672.
  
     0.552
DVU_2408
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.551
DVU_2407
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PH01257.
  
    0.550
DVU_0721
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
  
 0.542
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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