Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_2437ABC transporter, permease protein; Identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687. (406 aa)    
Predicted Functional Partners:
DVU_3324
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.993
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.989
DVU_0484
ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.
 
 0.959
DVU_2439
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.944
ftsE
Cell division ATP-binding protein FtsE, putative; Part of the ABC transporter FtsEX involved in cellular division.
   
 0.927
DVU_0105
Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.
 
      0.900
DVU_0968
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
      0.900
DVU_1236
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005.
 
      0.900
DVU_2343
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
      0.900
DVU_0388
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
      0.899
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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