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DVU_2460 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2460" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2460Uncharacterized protein; Identified by Glimmer2; putative (197 aa)    
Predicted Functional Partners:
DVU_2459
Uncharacterized protein; Identified by Glimmer2; putative (149 aa)
 
      0.995
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (347 aa)
   
 
      0.892
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (856 aa)
   
      0.868
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1372 aa)
   
 
      0.846
DVU_2461
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP-P42062; match to protein family HMM PF00528 (339 aa)
              0.837
DVU_2462
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP-P42063; match to protein family HMM PF00528 (300 aa)
              0.831
DVU_1826
Uncharacterized protein; Identified by Glimmer2; putative (90 aa)
   
          0.752
DVU_1589
Uncharacterized protein; Identified by Glimmer2; putative (262 aa)
   
          0.750
DVU_3190
Uncharacterized protein; Identified by Glimmer2; putative (555 aa)
   
          0.734
DVU_2427
Uncharacterized protein; Identified by Glimmer2; putative (213 aa)
   
          0.723
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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