Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2483Cytochrome c family protein; Identified by similarity to SP:P00135; match to protein family HMM PF02085. (581 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034.
    0.992
DVU_2485
Membrane protein, putative.
 
    0.932
fdnG-2
Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.762
DVU_2481
Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175.
  
    0.654
DVU_1056
Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
   
    0.608
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP:P94690.
  
    0.598
DVU_0266
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.580
DVU_2212
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00146.
  
    0.524
potC
Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528.
   
    0.486
DVU_3097
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
 
 
 0.470
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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