STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2483Cytochrome c family protein; Identified by similarity to SP:P00135; match to protein family HMM PF02085. (581 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034.
    0.992
DVU_2485
Membrane protein, putative.
 
    0.930
fdnG-2
Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.760
DVU_2481
Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175.
  
    0.654
DVU_1056
Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
   
    0.602
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP:P94690.
  
    0.577
DVU_3097
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
 
 
 0.573
DVU_0266
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.563
DVU_1013
Type I secretion outer membrane protein, TolC family; Identified by similarity to GP:150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
   
 
 0.529
DVU_2212
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00146.
  
    0.527
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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