Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_2485Membrane protein, putative. (354 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034.
 
  
 0.965
DVU_2483
Cytochrome c family protein; Identified by similarity to SP:P00135; match to protein family HMM PF02085.
 
    0.932
cydB
Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to SP:P94365; match to protein family HMM PF02322; match to protein family HMM TIGR00203.
  
 
 0.925
DVU_3107
Identified by match to protein family HMM PF00034.
 
  
 0.820
fdnG-2
Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.702
DVU_0638
Membrane protein, putative; Identified by similarity to OMNI:CT0045.
  
     0.563
DVU_2481
Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175.
  
  
 0.505
DVU_2225
acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit.
 
     0.486
DVU_1081
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
   
 0.480
DVU_1688
1-acyl-sn-glycerol-3-phosphate acyltransferase, putative; Identified by match to protein family HMM PF01553.
 
     0.440
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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