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DVU_2485 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2485" - annotation not available in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2485annotation not available (354 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034 (430 aa)
 
   
  0.970
DVU_2483
Cytochrome c family protein; Identified by similarity to SP-P00135; match to protein family HMM PF02085 (581 aa)
 
   
  0.952
cydB
Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to SP-P94365; match to protein family HMM PF02322; match to protein family HMM TIGR00203 (341 aa)
   
 
  0.922
DVU_3107
Identified by match to protein family HMM PF00034 (589 aa)
 
   
  0.810
fdnG-2
Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP-P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family (1003 aa)
     
 
  0.806
DVU_0266
Uncharacterized protein; Identified by Glimmer2; putative (408 aa)
 
 
      0.726
DVU_0136
Uncharacterized protein; Identified by Glimmer2; putative (72 aa)
   
          0.663
DVU_1905
Uncharacterized protein; Identified by Glimmer2; putative (142 aa)
   
          0.630
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP-P94690 (126 aa)
   
          0.629
DVU_0265
annotation not available (219 aa)
   
     
  0.602
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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