Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_2522Hypothetical protein; Identified by Glimmer2; putative. (200 aa)    
Predicted Functional Partners:
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.833
DVU_0400
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.770
DVU_0850
Heterodisulfide reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF00037.
  
     0.765
DVU_2523
Lipoprotein, putative.
  
    0.750
DVU_0651
Membrane protein, putative.
  
    0.716
DVU_0691
Membrane protein, putative.
  
    0.698
DVU_1241
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1126.
  
     0.646
DVU_2471
Oxidoreductase, selenocysteine-containing; Selenoprotein; identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
  
     0.641
DVU_1460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.618
DVU_0245
Protein phosphatase, putative; Identified by match to protein family HMM PF00782.
  
     0.614
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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