STRINGSTRING
DVU_2540 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2540" - 2-hydroxyglutaryl-CoA dehydratase, D-component in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_25402-hydroxyglutaryl-CoA dehydratase, D-component; Identified by similarity to GP-38802; match to protein family HMM PF06050 (380 aa)    
Predicted Functional Partners:
DVU_2541
CoA-substrate-specific enzyme activase, putative; Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 (269 aa)
   
  0.995
DVU_2539
Uncharacterized protein; Identified by Glimmer2; putative (40 aa)
              0.845
DVU_1670
Uncharacterized protein; Identified by similarity to OMNI-NTL03CP2236; Belongs to the sulfur carrier protein TusA family (212 aa)
 
          0.708
DVU_2753
Identified by match to protein family HMM TIGR01909 (275 aa)
 
          0.643
DVU_2542
Uncharacterized protein; Identified by Glimmer2; putative (41 aa)
              0.531
selB
Selenocysteine-specific translation elongation factor; Identified by similarity to SP-P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 (642 aa)
 
          0.523
thrS
Threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction- L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr) (644 aa)
              0.480
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (176 aa)
              0.480
DVU_2663
Uncharacterized protein; Identified by similarity to GP-19886926 (158 aa)
   
          0.466
DVU_0292
Uncharacterized protein; Identified by Glimmer2; putative (368 aa)
   
          0.464
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (28%) [HD]