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DVU_2555 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2555" - MATE efflux family protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2555MATE efflux family protein; Identified by similarity to OMNI-NTL01RSA1213; match to protein family HMM PF01554; match to protein family HMM TIGR00797 (473 aa)    
Predicted Functional Partners:
DVU_2554
Uncharacterized protein; Identified by similarity to OMNI-NTL01FN0863 (294 aa)
              0.886
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
   
   
  0.659
DVU_1875
DafA protein; Identified by similarity to SP-P77527 (105 aa)
 
     
  0.632
DVU_1194
Uncharacterized protein; Identified by Glimmer2; putative (368 aa)
   
   
  0.612
DVU_0602
Uncharacterized protein; Identified by Glimmer2; putative (120 aa)
   
        0.607
DVU_1683
Uncharacterized protein; Identified by Glimmer2; putative (578 aa)
   
          0.604
DVU_0155
Identified by match to protein family HMM PF01663 (462 aa)
 
          0.603
DVU_1045
Uncharacterized protein; Identified by Glimmer2; putative (198 aa)
   
          0.594
DVU_2553
Identified by match to protein family HMM PF01106 (81 aa)
   
        0.593
DVU_3173
Uncharacterized protein; Identified by Glimmer2; putative (58 aa)
   
          0.571
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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