Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Ferrous ion transport protein, putative; Identified by similarity to GP-19887847; match to protein family HMM PF04023 (78 aa)
Predicted Functional Partners:
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system (732 aa)
Uncharacterized protein; Identified by Glimmer2; putative (51 aa)
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (281 aa)
Ferrous iron transport protein A, putative; Identified by similarity to OMNI-NTL02MA3391; match to protein family HMM PF04023 (86 aa)
Oligopeptide ABC transporter, ATP-binding protein; Identified by similarity to SP-P42064; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily (321 aa)
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM PF01546 (366 aa)
Uncharacterized protein; Identified by Glimmer2; putative (195 aa)
TonB protein, putative; Identified by similarity to GP-14595286; match to protein family HMM TIGR01352 (341 aa)
TonB domain protein; Identified by similarity to GP-17982262; match to protein family HMM TIGR01352 (169 aa)
TonB domain protein; Identified by similarity to GP-19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352 (302 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough