Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_2579TPR domain protein; Identified by match to protein family HMM PF00515. (209 aa)    
Predicted Functional Partners:
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
    0.822
ccmF
Cytochrome c-type biogenesis protein CcmF; Identified by match to protein family HMM PF01578.
  
 
 0.772
DVU_3272
TPR domain protein; Identified by match to protein family HMM PF00515.
 
 
 0.659
DVU_2580
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
       0.646
DVU_2581
Response regulator; Identified by match to protein family HMM PF00072.
       0.639
DVU_2125
TPR domain protein; Identified by match to protein family HMM PF00515.
 
 
 0.598
DVU_2628
TPR domain protein; Identified by match to protein family HMM PF00515.
 
 
 0.535
DVU_2937
TPR domain protein/response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515.
 
 
 0.529
DVU_2582
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
    0.518
DVU_1583
TPR domain protein; Identified by match to protein family HMM PF00515.
 
   0.475
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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