STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2602Conserved domain protein; Identified by similarity to OMNI:NTL02SC5552. (227 aa)    
Predicted Functional Partners:
DVU_1487
Conserved domain protein.
   
    0.770
DVU_1723
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.744
DVU_1496
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.741
DVU_2715
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1103.
   
    0.737
DVU_1125
Conserved domain protein; Identified by similarity to GP:5531665.
   
    0.708
DVU_1495
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.708
DVU_1968
Oxidoreductase, putative.
   
    0.708
DVU_2153
Tail fiber protein, putative.
   
    0.708
DVU_2604
Conserved hypothetical protein; Identified by similarity to GP:13186164.
  
    0.687
DVU_2664
Phosphate ABC transporter, ATP-binding protein, putative; Identified by similarity to OMNI:NTL03PA05367; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
   
    0.672
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.