STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
motA-3Chemotaxis protein MotA; Identified by similarity to SP:P09348. (281 aa)    
Predicted Functional Partners:
DVU_2609
Chemotaxis MotB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691.
 
 0.990
DVU_2228
motB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691.
  
 0.964
DVU_0048
Chemotaxis protein MotB; Identified by similarity to SP:O07887; match to protein family HMM PF00691.
  
 0.963
DVU_0049
OmpA family protein; Identified by similarity to SP:O07887; match to protein family HMM PF00691.
  
 0.963
pomB
Chemotaxis protein PomB; Identified by similarity to GP:2130949; match to protein family HMM PF00691.
  
 0.963
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.952
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.940
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.929
flgG
Flagellar basal-body rod protein FlgG; Identified by similarity to SP:P16439; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
 
  
 0.917
DVU_0512
Flagellar basal-body rod protein, putative; Identified by similarity to SP:P75939; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
 
  
 0.908
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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