STRINGSTRING
DVU_2655 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2655" - Identified by match to protein family HMM PF00768 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2655Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family (441 aa)    
Predicted Functional Partners:
mtgA
Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family (248 aa)
       
  0.947
DVU_0633
Penicillin-binding protein; Identified by similarity to GP-1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 (807 aa)
         
  0.861
DVU_0786
Penicillin-binding protein; Identified by similarity to SP-P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 (595 aa)
 
 
  0.820
DVU_1881
PhoH family protein; Identified by similarity to SP-P46343; match to protein family HMM PF02562 (338 aa)
            0.719
rodA
Peptidoglycan glycosyltransferase MrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily (371 aa)
   
 
  0.578
DVU_1563
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (1039 aa)
         
  0.531
DVU_0041
Transglycosylase, SLT family; Identified by similarity to OMNI-SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476 (587 aa)
         
  0.514
lgt
Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins (263 aa)
 
        0.443
DVU_0677
Transglycosylase domain protein; Identified by similarity to SP-P41052 (349 aa)
 
     
  0.442
DVU_2654
Uncharacterized protein; Identified by Glimmer2; putative (85 aa)
              0.434
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (12%) [HD]