STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyHDIG/HD/KH domain protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (519 aa)    
Predicted Functional Partners:
DVU_0670
Exopolysaccharide production protein, putative; Identified by match to protein family HMM PF04932.
  
  
 0.796
DVU_2057
Conserved hypothetical protein; Identified by similarity to OMNI:EF2761; match to protein family HMM PF04468.
 
  
 0.776
DVU_0047
Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.618
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
 
 
 0.539
DVU_2672
Membrane protein, putative; Identified by similarity to SP:Q9RKM3; match to protein family HMM PF03458.
       0.534
DVU_2670
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.530
DVU_0346
Membrane protein, putative.
  
  
 0.498
DVU_2609
Chemotaxis MotB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691.
  
   0.498
DVU_3227
Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.497
DVU_0048
Chemotaxis protein MotB; Identified by similarity to SP:O07887; match to protein family HMM PF00691.
   
   0.496
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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