Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_2686Peptidase, S24 family; Identified by match to protein family HMM PF00717. (260 aa)    
Predicted Functional Partners:
DVU_2685
Hypothetical protein; Identified by Glimmer2; putative.
       0.605
DVU_2688
Identified by similarity to SP:P07636; match to protein family HMM PF00665.
 
     0.579
DVU_2687
Hypothetical protein; Identified by Glimmer2; putative.
       0.503
DVU_2684
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.477
DVU_2689
Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763.
 
     0.468
DVU_1122
Portal protein, putative.
  
     0.455
DVU_2707
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
     0.448
DVU_2705
Phage uncharacterized protein; Identified by match to protein family HMM TIGR01630.
 
     0.427
DVU_2706
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01730; match to protein family HMM PF06074.
 
     0.425
DVU_2695
Conserved hypothetical protein.
 
     0.422
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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