STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2696Conserved hypothetical protein; Identified by similarity to OMNI:NMB1083. (162 aa)    
Predicted Functional Partners:
DVU_2695
Conserved hypothetical protein.
       0.800
DVU_2694
Hypothetical protein; Identified by Glimmer2; putative.
       0.768
DVU_2697
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.763
DVU_2765
Identified by match to protein family HMM PF00753.
   
 
 0.666
DVU_2310
Identified by match to protein family HMM PF00753.
    
 
 0.663
DVU_0933
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM TIGR00229.
  
 
 0.589
DVU_2577
DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
  
 
 0.580
DVU_2675
DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
  
 
 0.574
DVU_2693
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
DVU_2698
Lipoprotein, putative.
       0.494
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.