Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2703Hypothetical protein; Identified by Glimmer2; putative. (71 aa)    
Predicted Functional Partners:
DVU_2704
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1092.
  
    0.810
DVU_2705
Phage uncharacterized protein; Identified by match to protein family HMM TIGR01630.
  
    0.802
DVU_2702
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01121.
  
    0.795
DVU_2707
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
  
    0.794
DVU_2701
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.790
DVU_2706
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01730; match to protein family HMM PF06074.
  
    0.790
DVU_2698
Lipoprotein, putative.
  
    0.705
DVU_2699
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464.
  
    0.689
DVU_2700
Hypothetical protein; Identified by Glimmer2; putative.
       0.678
DVU_2694
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.493
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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