Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2708Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635. (162 aa)    
Predicted Functional Partners:
DVU_2707
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
  
 0.896
DVU_2706
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01730; match to protein family HMM PF06074.
 
    0.887
DVU_2705
Phage uncharacterized protein; Identified by match to protein family HMM TIGR01630.
 
     0.878
DVU_2695
Conserved hypothetical protein.
 
     0.843
DVU_2721
Phage tail tape measure protein, TP901 family, putative.
 
    0.829
DVU_2713
Conserved hypothetical protein.
 
    0.828
DVU_2710
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01727.
 
    0.822
DVU_2711
Major head subunit, putative; Identified by similarity to SP:Q9T1W1.
 
    0.818
DVU_1122
Portal protein, putative.
 
     0.817
DVU_1119
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
  
 0.808
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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