Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DVU_2716Tail sheath protein, putative; Identified by similarity to SP:P79678. (473 aa)    
Predicted Functional Partners:
DVU_2710
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01727.
 
  
 0.974
DVU_2711
Major head subunit, putative; Identified by similarity to SP:Q9T1W1.
 
  
 0.974
DVU_2713
Conserved hypothetical protein.
 
  
 0.973
DVU_2715
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1103.
  
  
 0.931
DVU_2714
Conserved hypothetical protein; Identified by similarity to GP:6900380.
  
  
 0.927
DVU_2712
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.905
DVU_2729
Tail protein, putative; Identified by similarity to GP:19483737.
 
  
 0.847
DVU_2722
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01712.
 
    0.833
DVU_2723
Tail protein, putative; Identified by similarity to SP:P08558.
 
    0.832
DVU_2724
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
    0.830
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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