Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
livFHigh-affinity branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21630; match to protein family HMM PF00005. (241 aa)    
Predicted Functional Partners:
livM
High-affinity branched chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
DVU_0549
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
DVU_0714
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
livH
High-affinity branched-chain amino acid ABC ransporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.992
DVU_0548
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.974
DVU_0713
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.971
livG
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
  
0.952
DVU_2744
High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; Identified by match to protein family HMM PF01094.
 
  
 0.919
DVU_0551
High-affinity branched-chain amino acid ABC transporter ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
  
  
 
0.904
DVU_0716
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
  
  
 
0.904
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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