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DVU_2763 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2763" - TPR/GGDEF domain protein in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2763TPR/GGDEF domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (891 aa)    
Predicted Functional Partners:
DVU_1683
Uncharacterized protein; Identified by Glimmer2; putative (578 aa)
   
 
      0.958
DVU_2432
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (1413 aa)
     
 
  0.848
DVU_1414
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (997 aa)
     
 
  0.818
DVU_1875
DafA protein; Identified by similarity to SP-P77527 (105 aa)
 
 
      0.809
DVU_1194
Uncharacterized protein; Identified by Glimmer2; putative (368 aa)
 
      0.800
DVU_0449
Protein-glutamate methylesterase; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR (1513 aa)
     
 
  0.796
DVU_1045
Uncharacterized protein; Identified by Glimmer2; putative (198 aa)
   
 
      0.786
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
 
 
  0.770
DVU_3190
Uncharacterized protein; Identified by Glimmer2; putative (555 aa)
   
        0.768
DVU_0602
Uncharacterized protein; Identified by Glimmer2; putative (120 aa)
   
          0.768
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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