Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2768comF family protein; Identified by similarity to SP:P31773. (298 aa)    
Predicted Functional Partners:
DVU_2069
DNA processing protein DprA, putative; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
 
 
 0.939
DVU_3257
DNA internalization-related competence protein ComEC/Rec2; Identified by similarity to SP:P39695; match to protein family HMM TIGR00360.
 
  
 0.921
DVU_0710
Competence protein comM, putative; Identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM TIGR00368.
 
  
 0.866
gpt
Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
  
 0.797
DVU_0464
Prephenate dehydrogenase; Identified by match to protein family HMM PF02153.
   
  
 0.787
radC
DNA repair protein RadC; Identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
 
    0.782
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
   
   0.774
DVU_0833
Conserved hypothetical protein TIGR00252; Identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.
 
    0.761
DVU_0295
Amine oxidase, flavin-containing.
  
    0.708
DVU_0517
Peptidase, M23/M37 family; Identified by similarity to SP:P75942; match to protein family HMM PF01551.
  
    0.703
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.