Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dsvCDissimilatory sulfite reductase, gamma subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria; Belongs to the DsrC/TusE family. (105 aa)    
Predicted Functional Partners:
dsvA
Dissimilatory sulfite reductase alpha subunit; Part of the complex that catalyzes the reduction of sulfite to sulfide. The alpha and beta subunits may have arisen by gene duplication. They both bind 2 iron-sulfur clusters, but the alpha subunit seems to be catalytically inactive, due to substitutions along the putative substrate access channel, and because it binds sirohydrochlorin (the dematallated form of siroheme) instead of siroheme.
 
 
 0.999
dvsB
Dissimilatory sulfite reductase beta subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria.
 
 
 0.997
DVU_1289
Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037.
 
 0.911
aprB
Adenylylsulphate reductase, beta subunit; Identified by similarity to GP:7109234; match to protein family HMM PF00037; match to protein family HMM TIGR02060.
  
 
 0.886
DVU_1290
Nitrate reductase, gamma subunit, putative; Identified by match to protein family HMM PF02665.
 
  
 0.880
aprA
Adenylyl-sulphate reductase, alpha subunit; Identified by similarity to GP:7109235; match to protein family HMM TIGR02061.
  
 
 0.825
DVU_1288
Cytochrome c family protein; Identified by similarity to OMNI:AF0503.
 
  
 0.779
DVU_1286
Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916.
 
  
 0.690
DVU_0264
Ferredoxin, 4Fe-4S, putative; Identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754.
 
 
 0.653
DVU_1968
Oxidoreductase, putative.
 
     0.645
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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