STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2779Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547. (461 aa)    
Predicted Functional Partners:
DVU_3072
ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.
 
  
  0.977
DVU_0291
ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.
 
  
  0.923
DVU_0292
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.781
DVU_1036
Membrane protein, putative.
  
 0.772
xth
Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.
      0.503
DVU_2780
Membrane protein, putative; Identified by similarity to OMNI:NTL01BH1681; match to protein family HMM PF02588.
       0.484
DVU_0609
Lipoprotein, putative; Identified by similarity to OMNI:NTL01SM01830.
  
    0.409
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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