Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_2808TonB domain protein; Identified by similarity to GP:17982262; match to protein family HMM TIGR01352. (169 aa)    
Predicted Functional Partners:
DVU_2807
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
 
 0.949
DVU_2806
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
 
 0.907
DVU_2383
tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
 
 0.809
DVU_2805
Cobalamin synthesis protein/P47K family; Identified by match to protein family HMM PF02492.
  
    0.744
DVU_2389
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
 
 0.728
DVU_3100
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
 
 0.728
tolQ-1
tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618.
  
 
 0.690
tolQ-2
tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618.
  
 
 0.690
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
   
 
 0.580
DVU_0266
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.462
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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