Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0281 | DVU_2524 | DVU_0281 | DVU_2524 | Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397. | Cytochrome c3, putative; Identified by match to protein family HMM PF02085. | 0.554 |
| DVU_0281 | DVU_2809 | DVU_0281 | DVU_2809 | Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397. | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | 0.552 |
| DVU_0281 | DVU_3062 | DVU_0281 | DVU_3062 | Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 0.688 |
| DVU_2272 | DVU_2524 | DVU_2272 | DVU_2524 | Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901. | Cytochrome c3, putative; Identified by match to protein family HMM PF02085. | 0.453 |
| DVU_2272 | DVU_2809 | DVU_2272 | DVU_2809 | Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901. | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | 0.453 |
| DVU_2272 | DVU_2811 | DVU_2272 | DVU_2811 | Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901. | Formate dehydrogenase, beta subunit, putative; Beta chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The beta chain is an electron transfer unit. | 0.810 |
| DVU_2272 | DVU_3062 | DVU_2272 | DVU_3062 | Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 0.433 |
| DVU_2272 | fdnG-3 | DVU_2272 | DVU_2812 | Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901. | Formate dehydrogenase, alpha subunit, selenocysteine-containing; Alpha chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The alpha subunit of formate dehydrogenase forms the active site. | 0.813 |
| DVU_2524 | DVU_0281 | DVU_2524 | DVU_0281 | Cytochrome c3, putative; Identified by match to protein family HMM PF02085. | Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397. | 0.554 |
| DVU_2524 | DVU_2272 | DVU_2524 | DVU_2272 | Cytochrome c3, putative; Identified by match to protein family HMM PF02085. | Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901. | 0.453 |
| DVU_2524 | DVU_2809 | DVU_2524 | DVU_2809 | Cytochrome c3, putative; Identified by match to protein family HMM PF02085. | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | 0.583 |
| DVU_2524 | DVU_3062 | DVU_2524 | DVU_3062 | Cytochrome c3, putative; Identified by match to protein family HMM PF02085. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 0.556 |
| DVU_2809 | DVU_0281 | DVU_2809 | DVU_0281 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397. | 0.552 |
| DVU_2809 | DVU_2272 | DVU_2809 | DVU_2272 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901. | 0.453 |
| DVU_2809 | DVU_2524 | DVU_2809 | DVU_2524 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Cytochrome c3, putative; Identified by match to protein family HMM PF02085. | 0.583 |
| DVU_2809 | DVU_2810 | DVU_2809 | DVU_2810 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Formate dehydrogenase formation protein FdhE, putative; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. | 0.770 |
| DVU_2809 | DVU_2811 | DVU_2809 | DVU_2811 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Formate dehydrogenase, beta subunit, putative; Beta chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The beta chain is an electron transfer unit. | 0.952 |
| DVU_2809 | DVU_3062 | DVU_2809 | DVU_3062 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 0.561 |
| DVU_2809 | cyf | DVU_2809 | DVU_1817 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Cytochrome c-553; Natural electron acceptor for a formate dehydrogenase. | 0.550 |
| DVU_2809 | fdnG-3 | DVU_2809 | DVU_2812 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. | Formate dehydrogenase, alpha subunit, selenocysteine-containing; Alpha chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The alpha subunit of formate dehydrogenase forms the active site. | 0.937 |
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