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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2840Conserved hypothetical protein; Identified by similarity to OMNI:VCA0483. (233 aa)    
Predicted Functional Partners:
DVU_1510
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.798
DVU_2841
Type II restriction endonuclease, putative; Identified by similarity to SP:P14633.
       0.773
DVU_2842
Type II DNA modification methyltransferase, putative; Identified by similarity to SP:P11876; match to protein family HMM PF00145; match to protein family HMM TIGR00675.
  
    0.539
DVU_2843
DNA mismatch endonuclease Vsr, putative; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.525
DVU_2844
Hypothetical protein; Identified by Glimmer2; putative.
       0.497
DVU_2845
HIT family protein; Identified by similarity to SP:O07513; match to protein family HMM PF01230.
       0.497
DVU_2846
Hypothetical protein; Identified by Glimmer2; putative.
       0.497
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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