Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2845HIT family protein; Identified by similarity to SP:O07513; match to protein family HMM PF01230. (142 aa)    
Predicted Functional Partners:
DVU_2846
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.794
DVU_2844
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.778
DVU_2843
DNA mismatch endonuclease Vsr, putative; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
  
    0.753
DVU_2842
Type II DNA modification methyltransferase, putative; Identified by similarity to SP:P11876; match to protein family HMM PF00145; match to protein family HMM TIGR00675.
  
    0.724
DVU_0395
HIT family protein; Identified by similarity to SP:O07513; match to protein family HMM PF01230.
  
     0.630
glnA
Glutamine synthetase, type I; Identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.
  
   0.588
DVU_2841
Type II restriction endonuclease, putative; Identified by similarity to SP:P14633.
  
    0.510
DVU_2840
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0483.
       0.497
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
   0.467
DVU_3292
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070.
   
   0.416
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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