DVU_2849 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

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Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DVU_0219	DVU_2849	Tail protein, putative; Identified by similarity to GP:19483737.	Tail fiber protein, putative.	0.840
DVU_0219	DVU_2851	Tail protein, putative; Identified by similarity to GP:19483737.	Tail protein, putative; Identified by similarity to GP:19483757.	0.873
DVU_0219	DVU_2852	Tail protein, putative; Identified by similarity to GP:19483737.	Tail protein, putative; Identified by similarity to GP:19483756.	0.822
DVU_0219	DVU_2853	Tail protein, putative; Identified by similarity to GP:19483737.	Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.	0.811
DVU_0219	DVU_2854	Tail protein, putative; Identified by similarity to GP:19483737.	Tail protein, putative; Identified by similarity to SP:P08558.	0.841
DVU_0219	DVU_2855	Tail protein, putative; Identified by similarity to GP:19483737.	tail/DNA circulation protein, putative; Identified by similarity to GP:19483753.	0.782
DVU_0219	DVU_2859	Tail protein, putative; Identified by similarity to GP:19483737.	Tail sheath protein, putative; Identified by similarity to SP:P79678.	0.838
DVU_2729	DVU_2849	Tail protein, putative; Identified by similarity to GP:19483737.	Tail fiber protein, putative.	0.836
DVU_2729	DVU_2851	Tail protein, putative; Identified by similarity to GP:19483737.	Tail protein, putative; Identified by similarity to GP:19483757.	0.807
DVU_2729	DVU_2852	Tail protein, putative; Identified by similarity to GP:19483737.	Tail protein, putative; Identified by similarity to GP:19483756.	0.805
DVU_2729	DVU_2853	Tail protein, putative; Identified by similarity to GP:19483737.	Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.	0.808
DVU_2729	DVU_2854	Tail protein, putative; Identified by similarity to GP:19483737.	Tail protein, putative; Identified by similarity to SP:P08558.	0.804
DVU_2729	DVU_2855	Tail protein, putative; Identified by similarity to GP:19483737.	tail/DNA circulation protein, putative; Identified by similarity to GP:19483753.	0.787
DVU_2729	DVU_2859	Tail protein, putative; Identified by similarity to GP:19483737.	Tail sheath protein, putative; Identified by similarity to SP:P79678.	0.801
DVU_2848	DVU_2849	Tail fiber assembly protein, putative.	Tail fiber protein, putative.	0.833
DVU_2848	DVU_2850	Tail fiber assembly protein, putative.	Tail protein, putative; Identified by similarity to GP:19483737.	0.809
DVU_2848	DVU_2851	Tail fiber assembly protein, putative.	Tail protein, putative; Identified by similarity to GP:19483757.	0.809
DVU_2848	DVU_2852	Tail fiber assembly protein, putative.	Tail protein, putative; Identified by similarity to GP:19483756.	0.800
DVU_2848	DVU_2853	Tail fiber assembly protein, putative.	Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.	0.821
DVU_2848	DVU_2854	Tail fiber assembly protein, putative.	Tail protein, putative; Identified by similarity to SP:P08558.	0.834

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