Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2852Tail protein, putative; Identified by similarity to GP:19483756. (158 aa)    
Predicted Functional Partners:
DVU_2851
Tail protein, putative; Identified by similarity to GP:19483757.
 
    0.991
DVU_2853
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
    0.991
DVU_2854
Tail protein, putative; Identified by similarity to SP:P08558.
 
    0.990
DVU_2850
Tail protein, putative; Identified by similarity to GP:19483737.
 
    0.989
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
 
    0.965
DVU_0214
tail/DNA circulation protein, putative; Identified by similarity to GP:19483753.
 
    0.958
DVU_2849
Tail fiber protein, putative.
 
    0.952
DVU_0216
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
    0.941
DVU_2855
tail/DNA circulation protein, putative; Identified by similarity to GP:19483753.
 
    0.894
DVU_2859
Tail sheath protein, putative; Identified by similarity to SP:P79678.
 
    0.879
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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